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Scientist, Bioinformatics Resume

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Cambridge, MA

CAREER SUMMARY:

  • Result - driven bioinformatics leader with unique combination of impactful achievements in industry
  • The author of 59 scientific publications and 43 issued patents with h-index of 26 and i10-index of 39.
  • Created popular bioinformatics tools for protein structure comparison (SARF, SARF2) and prediction (123D, 123D+), motif finding (Motifer), gene prediction and a portal SNP-Seek for allele mining.
  • Experience in managing bioinformatics teams, hands-on skills using and developing bioinformatics tools and databases.

PROFESSIONAL EXPERIENCE:

Scientist, Bioinformatics

Confidential, Cambridge, MA

Responsibilities:

  • Built a prototype system of gene nomination for trait improvement in crops
  • Enhanced Inari Scientific Advisory Board with bioinformatics expertise

Sr. Scientist, Bioinformatics

Confidential, Los Banos, Philippines

Responsibilities:

  • Led a group of computational scientists, bioinformatics analysts and programmers
  • Provided bioinformatics support for the institute
  • Organized various biological data, including more than three thousand rice genome sequences, genotyping and phenotyping data
  • Built pipelines of NGS analysis, benchmarked available software and developed new algorithms for solving biological problems

Manager of Computational Biology

Confidential, Thousand Oaks, CA

Responsibilities:

  • Next Generation Sequencing pipeline for DNA marker discovery
  • EST/cDNA/Protein sequence clustering system
  • Gene prediction
  • Protein annotation pipeline
  • Expression data analysis pipeline
  • Promoter sequence analysis

Computational Scientist

Confidential, Thousand Oaks, CA

Responsibilities:

  • Designed a benchmark to assess quality of methods of finding distant homologs
  • Integrated threading program 123D into the pipeline of EST sequence analysis
  • Developed algorithms to parse protein domains
  • Proposed a new method for sequence alignment
  • Elaborated novel statistics for sequence comparison
  • Made presentations at the conferences, seminars, meetings

Visiting Fellow

Confidential, MD

Responsibilities:

  • Developed a new program for protein structure comparison SARF2
  • Developed a program 123D for protein fold recognition

Postdoctoral Fellow

Confidential

Responsibilities:

  • Search for the most suitable proteins for protein engineering experiments
  • Linked statistical characteristics of protein 3D structures with kinetics of protein folding

Postdoctoral Fellow

Confidential

Responsibilities:

  • Developed an algorithm for protein structure comparison SARF
  • Investigated biological role of common structural motifs in proteins

Junior Researcher

Confidential

Responsibilities:

  • Implemented “Generalized Portrait” algorithm (a prototype of the Support Vector Machine) for promoter recognition in E.coli.
  • Developed a new statistical method for rapid comparison of DNA sequences.
  • Integrated these programs into the package for DNA sequence analysis DNA-SUN

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